Kate Culhane, Dept. of Ecology, Evolution, and Marine Biology, UC Santa Barbara
kathrynculhane@ucsb.edu


Summary

Descriptions of raw datasets used in further analyses. Datasets are located in the project directory data_raw.


File locations

data_raw
├── field                        # Field/lab measurements
    ├── original_spreadsheets        # Pre-cleaning data
        ├── [...].xlxs                  # Original Excel files
        └── data_errata.txt             # Log of corrections made to .csv files
    ├── diet_field.csv           # Stomach pump invert ID (all islands)
    ├── naxos_meta.csv           # Site metadata (Naxos)
    ├── naxos_veg.csv            # Vegetation quadrats (Naxos)
    ├── prey_meta.csv            # Pitfall/sticky metadata (all islands)
    ├── prey_pitfall.csv         # Pitfall trap invert ID (all islands)
    └── prey_sticky.csv          # Sticky trap invert ID (all islands)

Limitations:

  • Prey/diet IDed to order
  • Prey measured as relative abundance
##### PACKAGES #####

library(tidyverse) # data manipulation & visualization

##### DATA #####

diet_raw <- read_csv("data_raw/field/diet_field.csv")
meta_raw <- read_csv("data_raw/field/naxos_meta.csv")
veg_raw <- read_csv("data_raw/field/naxos_veg.csv")
prey_meta_raw <- read_csv("data_raw/field/prey_meta.csv")
prey_p_raw <- read_csv("data_raw/field/prey_pitfall.csv")
prey_s_raw <- read_csv("data_raw/field/prey_sticky.csv")

Field/lab data

Site metadata

Variables

  • variable_name: definition
meta_raw

Stomach pump invert ID

Variables

  • variable_name: definition
diet_raw

Vegetation quadrats

Variables

  • variable_name: definition
veg_raw

Pitfall/sticky metadata

Variables

  • variable_name: definition
prey_meta_raw

Pitfall trap invert ID (all islands)

Variables

  • variable_name: definition
prey_p_raw

Sticky trap invert ID (all islands)

Variables

  • variable_name: definition
prey_s_raw




Session info
devtools::session_info()
## - Session info ----------------------------------------------------------------------------------------------------
##  setting  value                       
##  version  R version 4.1.0 (2021-05-18)
##  os       Windows 10 x64              
##  system   i386, mingw32               
##  ui       RStudio                     
##  language (EN)                        
##  collate  English_United States.1252  
##  ctype    English_United States.1252  
##  tz       America/Los_Angeles         
##  date     2021-07-19                  
## 
## - Packages --------------------------------------------------------------------------------------------------------
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## 
## [1] C:/Users/kathr/Documents/git-repos/lizard-guts-naxos/renv/library/R-4.1/i386-w64-mingw32
## [2] C:/Users/kathr/AppData/Local/Temp/Rtmp4uARiT/renv-system-library
## 
##  P -- Loaded and on-disk path mismatch.