Kate Culhane, Dept. of Ecology, Evolution, and Marine Biology, UC Santa Barbara
kathrynculhane@ucsb.edu
Summary
Descriptions of raw datasets used in further analyses. Datasets are located in the project directory data_raw.
data_raw
├── field # Field/lab measurements
├── original_spreadsheets # Pre-cleaning data
├── [...].xlxs # Original Excel files
└── data_errata.txt # Log of corrections made to .csv files
├── diet_field.csv # Stomach pump invert ID (all islands)
├── naxos_meta.csv # Site metadata (Naxos)
├── naxos_veg.csv # Vegetation quadrats (Naxos)
├── prey_meta.csv # Pitfall/sticky metadata (all islands)
├── prey_pitfall.csv # Pitfall trap invert ID (all islands)
└── prey_sticky.csv # Sticky trap invert ID (all islands)Limitations:
##### PACKAGES #####
library(tidyverse) # data manipulation & visualization
##### DATA #####
diet_raw <- read_csv("data_raw/field/diet_field.csv")
meta_raw <- read_csv("data_raw/field/naxos_meta.csv")
veg_raw <- read_csv("data_raw/field/naxos_veg.csv")
prey_meta_raw <- read_csv("data_raw/field/prey_meta.csv")
prey_p_raw <- read_csv("data_raw/field/prey_pitfall.csv")
prey_s_raw <- read_csv("data_raw/field/prey_sticky.csv")Variables
variable_name: definitionmeta_rawVariables
variable_name: definitiondiet_rawVariables
variable_name: definitionveg_rawVariables
variable_name: definitionprey_meta_rawVariables
variable_name: definitionprey_p_rawVariables
variable_name: definitionprey_s_raw
devtools::session_info()## - Session info ----------------------------------------------------------------------------------------------------
## setting value
## version R version 4.1.0 (2021-05-18)
## os Windows 10 x64
## system i386, mingw32
## ui RStudio
## language (EN)
## collate English_United States.1252
## ctype English_United States.1252
## tz America/Los_Angeles
## date 2021-07-19
##
## - Packages --------------------------------------------------------------------------------------------------------
## ! package * version date lib source
## P assertthat 0.2.1 2019-03-21 [?] CRAN (R 4.1.0)
## P backports 1.2.1 2020-12-09 [?] CRAN (R 4.1.0)
## P broom 0.7.8 2021-06-24 [?] CRAN (R 4.1.0)
## P cachem 1.0.5 2021-05-15 [?] CRAN (R 4.1.0)
## P callr 3.7.0 2021-04-20 [?] CRAN (R 4.1.0)
## P cellranger 1.1.0 2016-07-27 [?] CRAN (R 4.1.0)
## P cli 3.0.0 2021-06-30 [?] CRAN (R 4.1.0)
## P cluster 2.1.2 2021-04-17 [?] CRAN (R 4.1.0)
## P colorspace 2.0-2 2021-06-24 [?] CRAN (R 4.1.0)
## P crayon 1.4.1 2021-02-08 [?] CRAN (R 4.1.0)
## P DBI 1.1.1 2021-01-15 [?] CRAN (R 4.1.0)
## P dbplyr 2.1.1 2021-04-06 [?] CRAN (R 4.1.0)
## P desc 1.3.0 2021-03-05 [?] CRAN (R 4.1.0)
## P devtools 2.4.2 2021-06-07 [?] CRAN (R 4.1.0)
## P digest 0.6.27 2020-10-24 [?] CRAN (R 4.1.0)
## P dplyr * 1.0.7 2021-06-18 [?] CRAN (R 4.1.0)
## P ellipsis 0.3.2 2021-04-29 [?] CRAN (R 4.1.0)
## P evaluate 0.14 2019-05-28 [?] CRAN (R 4.1.0)
## P fansi 0.5.0 2021-05-25 [?] CRAN (R 4.1.0)
## P farver 2.1.0 2021-02-28 [?] CRAN (R 4.1.0)
## P fastmap 1.1.0 2021-01-25 [?] CRAN (R 4.1.0)
## P forcats * 0.5.1 2021-01-27 [?] CRAN (R 4.1.0)
## P fs 1.5.0 2020-07-31 [?] CRAN (R 4.1.0)
## P generics 0.1.0 2020-10-31 [?] CRAN (R 4.1.0)
## P ggplot2 * 3.3.5 2021-06-25 [?] CRAN (R 4.1.0)
## P glue 1.4.2 2020-08-27 [?] CRAN (R 4.1.0)
## P gtable 0.3.0 2019-03-25 [?] CRAN (R 4.1.0)
## P haven 2.4.1 2021-04-23 [?] CRAN (R 4.1.0)
## P highr 0.9 2021-04-16 [?] CRAN (R 4.1.0)
## P hms 1.1.0 2021-05-17 [?] CRAN (R 4.1.0)
## P htmltools 0.5.1.1 2021-01-22 [?] CRAN (R 4.1.0)
## P httr 1.4.2 2020-07-20 [?] CRAN (R 4.1.0)
## P jsonlite 1.7.2 2020-12-09 [?] CRAN (R 4.1.0)
## P katereR 0.1.0 2021-07-15 [?] Github (katekathrynkat/katereR@a771b5e)
## P knitr 1.33 2021-04-24 [?] CRAN (R 4.1.0)
## P labeling 0.4.2 2020-10-20 [?] CRAN (R 4.1.0)
## P lattice * 0.20-44 2021-05-02 [?] CRAN (R 4.1.0)
## P lifecycle 1.0.0 2021-02-15 [?] CRAN (R 4.1.0)
## P lubridate 1.7.10 2021-02-26 [?] CRAN (R 4.1.0)
## P magrittr 2.0.1 2020-11-17 [?] CRAN (R 4.1.0)
## P MASS 7.3-54 2021-05-03 [?] CRAN (R 4.1.0)
## P Matrix 1.3-3 2021-05-04 [?] CRAN (R 4.1.0)
## P memoise 2.0.0 2021-01-26 [?] CRAN (R 4.1.0)
## P mgcv 1.8-35 2021-04-18 [?] CRAN (R 4.1.0)
## P modelr 0.1.8 2020-05-19 [?] CRAN (R 4.1.0)
## P munsell 0.5.0 2018-06-12 [?] CRAN (R 4.1.0)
## P nlme 3.1-152 2021-02-04 [?] CRAN (R 4.1.0)
## P permute * 0.9-5 2019-03-12 [?] CRAN (R 4.1.0)
## P pillar 1.6.1 2021-05-16 [?] CRAN (R 4.1.0)
## P pkgbuild 1.2.0 2020-12-15 [?] CRAN (R 4.1.0)
## P pkgconfig 2.0.3 2019-09-22 [?] CRAN (R 4.1.0)
## P pkgload 1.2.1 2021-04-06 [?] CRAN (R 4.1.0)
## P prettyunits 1.1.1 2020-01-24 [?] CRAN (R 4.1.0)
## P processx 3.5.2 2021-04-30 [?] CRAN (R 4.1.0)
## P ps 1.6.0 2021-02-28 [?] CRAN (R 4.1.0)
## P purrr * 0.3.4 2020-04-17 [?] CRAN (R 4.1.0)
## P R6 2.5.0 2020-10-28 [?] CRAN (R 4.1.0)
## P Rcpp 1.0.6 2021-01-15 [?] CRAN (R 4.1.0)
## P readr * 1.4.0 2020-10-05 [?] CRAN (R 4.1.0)
## P readxl 1.3.1 2019-03-13 [?] CRAN (R 4.1.0)
## P remotes 2.4.0 2021-06-02 [?] CRAN (R 4.1.0)
## renv 0.13.2 2021-03-30 [1] CRAN (R 4.1.0)
## P reprex 2.0.0 2021-04-02 [?] CRAN (R 4.1.0)
## P rlang 0.4.11 2021-04-30 [?] CRAN (R 4.1.0)
## P rmarkdown 2.9 2021-06-15 [?] CRAN (R 4.1.0)
## P rprojroot 2.0.2 2020-11-15 [?] CRAN (R 4.1.0)
## P rstudioapi 0.13 2020-11-12 [?] CRAN (R 4.1.0)
## P rvest 1.0.0 2021-03-09 [?] CRAN (R 4.1.0)
## P scales 1.1.1 2020-05-11 [?] CRAN (R 4.1.0)
## P sessioninfo 1.1.1 2018-11-05 [?] CRAN (R 4.1.0)
## P stringi 1.6.2 2021-05-17 [?] CRAN (R 4.1.0)
## P stringr * 1.4.0 2019-02-10 [?] CRAN (R 4.1.0)
## P testthat 3.0.4 2021-07-01 [?] CRAN (R 4.1.0)
## P tibble * 3.1.2 2021-05-16 [?] CRAN (R 4.1.0)
## P tidyr * 1.1.3 2021-03-03 [?] CRAN (R 4.1.0)
## P tidyselect 1.1.1 2021-04-30 [?] CRAN (R 4.1.0)
## P tidyverse * 1.3.1 2021-04-15 [?] CRAN (R 4.1.0)
## P usethis 2.0.1 2021-02-10 [?] CRAN (R 4.1.0)
## P utf8 1.2.1 2021-03-12 [?] CRAN (R 4.1.0)
## P vctrs 0.3.8 2021-04-29 [?] CRAN (R 4.1.0)
## P vegan * 2.5-7 2020-11-28 [?] CRAN (R 4.1.0)
## P withr 2.4.2 2021-04-18 [?] CRAN (R 4.1.0)
## P xfun 0.24 2021-06-15 [?] CRAN (R 4.1.0)
## P xml2 1.3.2 2020-04-23 [?] CRAN (R 4.1.0)
## P yaml 2.2.1 2020-02-01 [?] CRAN (R 4.1.0)
##
## [1] C:/Users/kathr/Documents/git-repos/lizard-guts-naxos/renv/library/R-4.1/i386-w64-mingw32
## [2] C:/Users/kathr/AppData/Local/Temp/Rtmp4uARiT/renv-system-library
##
## P -- Loaded and on-disk path mismatch.